STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEL97340.1Hypothetical protein. (730 aa)    
Predicted Functional Partners:
SEL97368.1
Hypothetical protein.
 
    
0.759
SEL97393.1
Hypothetical protein.
 
    
0.734
SEL97320.1
Starch-binding associating with outer membrane.
       0.618
SEL97413.1
Malate synthase.
  
    0.612
SEK98562.1
Competence/damage-inducible protein cinA; Belongs to the CinA family.
  
 
  0.583
SEL78912.1
Hypothetical protein.
  
     0.554
SEK29902.1
Quinoprotein glucose dehydrogenase.
  
    0.513
SEK92987.1
Quinoprotein glucose dehydrogenase.
  
    0.513
SEL13821.1
Putative collagen-binding domain of a collagenase.
  
    0.512
SEK17929.1
Putative collagen-binding domain of a collagenase.
  
    0.462
Your Current Organism:
Parapedobacter koreensis
NCBI taxonomy Id: 332977
Other names: KCTC 12643, LMG 23493, LMG:23493, P. koreensis, Parapedobacter koreensis Kim et al. 2007, Pedobacter sp. WPCB189, strain Jip14
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.