Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFA39005.1 | SFA39008.1 | SAMN04488511_101342 | SAMN04488511_101343 | Putative mRNA 3-end processing factor. | DNA ligase-1. | 0.993 |
SFA39005.1 | SFA39012.1 | SAMN04488511_101342 | SAMN04488511_101344 | Putative mRNA 3-end processing factor. | ATP-dependent helicase Lhr and Lhr-like helicase. | 0.917 |
SFA39005.1 | SFA39015.1 | SAMN04488511_101342 | SAMN04488511_101345 | Putative mRNA 3-end processing factor. | Putative phosphoesterase. | 0.902 |
SFA39005.1 | SFA45982.1 | SAMN04488511_101342 | SAMN04488511_105214 | Putative mRNA 3-end processing factor. | DNA polymerase (family 10). | 0.623 |
SFA39005.1 | polA | SAMN04488511_101342 | SAMN04488511_103119 | Putative mRNA 3-end processing factor. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.758 |
SFA39008.1 | SFA39005.1 | SAMN04488511_101343 | SAMN04488511_101342 | DNA ligase-1. | Putative mRNA 3-end processing factor. | 0.993 |
SFA39008.1 | SFA39012.1 | SAMN04488511_101343 | SAMN04488511_101344 | DNA ligase-1. | ATP-dependent helicase Lhr and Lhr-like helicase. | 0.916 |
SFA39008.1 | SFA39015.1 | SAMN04488511_101343 | SAMN04488511_101345 | DNA ligase-1. | Putative phosphoesterase. | 0.902 |
SFA39008.1 | SFA45982.1 | SAMN04488511_101343 | SAMN04488511_105214 | DNA ligase-1. | DNA polymerase (family 10). | 0.866 |
SFA39008.1 | SFA50483.1 | SAMN04488511_101343 | SAMN04488511_10991 | DNA ligase-1. | Exodeoxyribonuclease-3. | 0.725 |
SFA39008.1 | SFA58784.1 | SAMN04488511_101343 | SAMN04488511_12060 | DNA ligase-1. | Hypothetical protein. | 0.801 |
SFA39008.1 | SFA59251.1 | SAMN04488511_101343 | SAMN04488511_12160 | DNA ligase-1. | Putative mRNA 3-end processing factor. | 0.895 |
SFA39008.1 | SFA60317.1 | SAMN04488511_101343 | SAMN04488511_12723 | DNA ligase-1. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.962 |
SFA39008.1 | ligA | SAMN04488511_101343 | SAMN04488511_10672 | DNA ligase-1. | DNA ligase (NAD+); DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA; Belongs to the NAD-dependent DNA ligase family. LigA subfamily. | 0.879 |
SFA39008.1 | polA | SAMN04488511_101343 | SAMN04488511_103119 | DNA ligase-1. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.961 |
SFA39012.1 | SFA39005.1 | SAMN04488511_101344 | SAMN04488511_101342 | ATP-dependent helicase Lhr and Lhr-like helicase. | Putative mRNA 3-end processing factor. | 0.917 |
SFA39012.1 | SFA39008.1 | SAMN04488511_101344 | SAMN04488511_101343 | ATP-dependent helicase Lhr and Lhr-like helicase. | DNA ligase-1. | 0.916 |
SFA39012.1 | SFA39015.1 | SAMN04488511_101344 | SAMN04488511_101345 | ATP-dependent helicase Lhr and Lhr-like helicase. | Putative phosphoesterase. | 0.940 |
SFA39012.1 | SFA59251.1 | SAMN04488511_101344 | SAMN04488511_12160 | ATP-dependent helicase Lhr and Lhr-like helicase. | Putative mRNA 3-end processing factor. | 0.780 |
SFA39015.1 | SFA39005.1 | SAMN04488511_101345 | SAMN04488511_101342 | Putative phosphoesterase. | Putative mRNA 3-end processing factor. | 0.902 |
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