STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFA40666.1Gliding motility-associated C-terminal domain-containing protein. (1186 aa)    
Predicted Functional Partners:
SFA40661.1
Type IX secretion system membrane protein, PorP/SprF family.
 
     0.953
SFA52386.1
Starch-binding associating with outer membrane.
  
     0.639
SFA45353.1
Gliding motility-associated C-terminal domain-containing protein.
  
  
 
0.596
SFA57483.1
Type IX secretion system membrane protein, PorP/SprF family.
 
     0.574
SFA57488.1
Gliding motility-associated C-terminal domain-containing protein.
  
  
  0.546
SFA51368.1
Hypothetical protein.
  
     0.532
SFA43359.1
Carbohydrate family 9 binding domain-like.
  
     0.513
SFA40669.1
Hypothetical protein.
       0.481
SFA52508.1
Hypothetical protein.
  
     0.481
SFA52584.1
Hypothetical protein.
  
     0.479
Your Current Organism:
Pedobacter suwonensis
NCBI taxonomy Id: 332999
Other names: DSM 18130, KACC 11317, P. suwonensis, Pedobacter suwonensis Kwon et al. 2007, strain 15-52
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