STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFA42228.1Hypothetical protein. (494 aa)    
Predicted Functional Partners:
SFA42225.1
Hypothetical protein.
       0.773
SFA42233.1
Glycosyl transferase family 2.
       0.773
SFA42238.1
Hypothetical protein.
       0.773
SFA42241.1
EpsG family protein.
       0.773
SFA42216.1
Nucleoside-diphosphate-sugar epimerase.
       0.746
SFA42220.1
Hypothetical protein.
       0.746
SFA42246.1
Glycosyltransferase involved in cell wall bisynthesis.
       0.615
SFA42249.1
Hexapeptide repeat of succinyl-transferase.
       0.615
SFA42254.1
Hypothetical protein.
       0.536
SFA42258.1
Membrane protein involved in the export of O-antigen and teichoic acid.
       0.536
Your Current Organism:
Pedobacter suwonensis
NCBI taxonomy Id: 332999
Other names: DSM 18130, KACC 11317, P. suwonensis, Pedobacter suwonensis Kwon et al. 2007, strain 15-52
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.