STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFA44752.1Starch-binding associating with outer membrane. (476 aa)    
Predicted Functional Partners:
SFA44748.1
TonB-linked outer membrane protein, SusC/RagA family.
 
 
   0.973
SFA44755.1
Dipeptidyl aminopeptidase/acylaminoacyl peptidase.
 
     0.727
SFA43281.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.650
SFA52917.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.638
SFA52488.1
Chromosome partitioning protein, ParB family; Belongs to the ParB family.
  
 
 0.621
SFA52913.1
Starch-binding associating with outer membrane.
  
 
   0.560
SFA50847.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.559
SFA50843.1
Starch-binding associating with outer membrane.
  
 
   0.519
SFA44429.1
Starch-binding associating with outer membrane.
  
 
   0.501
SFA39475.1
SusD family protein.
  
 
   0.481
Your Current Organism:
Pedobacter suwonensis
NCBI taxonomy Id: 332999
Other names: DSM 18130, KACC 11317, P. suwonensis, Pedobacter suwonensis Kwon et al. 2007, strain 15-52
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.