STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFA46175.1DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain. (225 aa)    
Predicted Functional Partners:
SFA49744.1
PAS domain S-box-containing protein.
 
 0.977
SFA46171.1
Signal transduction histidine kinase.
 
   0.970
SFA45639.1
PAS domain S-box-containing protein.
 0.953
SFA60642.1
PAS domain S-box-containing protein.
 
0.951
SFA38314.1
PAS domain S-box-containing protein.
 
0.950
SFA55419.1
Hpt domain-containing protein.
  
 0.946
SFA60632.1
PAS domain S-box-containing protein.
  
0.912
SFA40949.1
PAS domain S-box-containing protein.
 
 0.887
SFA51683.1
His Kinase A (phospho-acceptor) domain-containing protein.
  
  0.876
SFA54180.1
PAS domain S-box-containing protein.
  0.871
Your Current Organism:
Pedobacter suwonensis
NCBI taxonomy Id: 332999
Other names: DSM 18130, KACC 11317, P. suwonensis, Pedobacter suwonensis Kwon et al. 2007, strain 15-52
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.