STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFA47225.1Hypothetical protein. (80 aa)    
Predicted Functional Partners:
SFA47229.1
Helix-turn-helix.
  
 
 0.937
SFA45963.1
Cystathionine beta-synthase.
  
 
 0.860
SFA57797.1
DNA-binding transcriptional regulator, XRE-family HTH domain.
  
 
 0.859
SFA47220.1
Substrate-binding protein-like domain-containing protein.
       0.535
SFA47234.1
Helicase conserved C-terminal domain-containing protein.
       0.487
SFA47214.1
Sugar (pentulose or hexulose) kinase.
       0.447
SFA47209.1
L-rhamnose isomerase / sugar isomerase.
       0.434
Your Current Organism:
Pedobacter suwonensis
NCBI taxonomy Id: 332999
Other names: DSM 18130, KACC 11317, P. suwonensis, Pedobacter suwonensis Kwon et al. 2007, strain 15-52
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.