STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFA48869.1Predicted transcriptional regulator. (122 aa)    
Predicted Functional Partners:
SFA48871.1
BlaR1 peptidase M56.
 
 
  0.969
SFA44834.1
BlaR1 peptidase M56.
 
 
  0.882
SFA60579.1
BlaR1 peptidase M56.
 
 
  0.882
SFA59109.1
BlaR1 peptidase M56.
 
 
  0.880
SFA58824.1
Signal transducer regulating beta-lactamase production, contains metallopeptidase domain.
 
 
  0.877
SFA48873.1
Hypothetical protein.
       0.773
SFA51894.1
Outer membrane transport energization protein TonB.
 
 
  0.681
SFA44832.1
Predicted transcriptional regulator.
  
  
 
0.659
SFA58828.1
Predicted transcriptional regulator.
  
  
 
0.636
SFA60580.1
Predicted transcriptional regulator.
  
  
 
0.630
Your Current Organism:
Pedobacter suwonensis
NCBI taxonomy Id: 332999
Other names: DSM 18130, KACC 11317, P. suwonensis, Pedobacter suwonensis Kwon et al. 2007, strain 15-52
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.