STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFA53462.1ABC-2 type transport system ATP-binding protein. (246 aa)    
Predicted Functional Partners:
SFA53472.1
ABC-2 type transport system permease protein.
 
  0.983
SFA53475.1
ABC-2 type transport system permease protein.
 
 
 0.967
SFA53465.1
Iron complex outermembrane recepter protein.
 
     0.919
SFA57912.1
ABC-2 type transport system permease protein.
  
  0.639
SFA60311.1
ABC-2 type transport system permease protein.
   
  0.639
atpD
ATP synthase F1 subcomplex beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.
    
 
 0.533
atpA
F-type H+-transporting ATPase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit.
    
   0.531
SFA52765.1
ATP synthase F1 subcomplex epsilon subunit.
    
   0.521
SFA56055.1
ABC-2 type transport system permease protein.
  
 
 0.516
SFA37799.1
WbqC-like protein family protein.
   
   0.464
Your Current Organism:
Pedobacter suwonensis
NCBI taxonomy Id: 332999
Other names: DSM 18130, KACC 11317, P. suwonensis, Pedobacter suwonensis Kwon et al. 2007, strain 15-52
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