SFA54323.1 protein (Pedobacter suwonensis) - STRING interaction network

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Score

SFA54323.1

ATP-binding cassette, subfamily F, member 3. (544 aa)

Predicted Functional Partners:

rplD

0.853

rpsO

0.851

rplU

0.851

rplM

0.850

rpsC

0.850

rpmH

0.847

rplR

0.847

rplC

0.846

rpmD

0.844

rplP

0.844

Your Current Organism:

Pedobacter suwonensis

NCBI taxonomy Id: 332999
Other names: DSM 18130, KACC 11317, P. suwonensis, Pedobacter suwonensis Kwon et al. 2007, strain 15-52

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SFA54323.1	rplC	SAMN04488511_11399	SAMN04488511_109139	ATP-binding cassette, subfamily F, member 3.	Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	0.846
SFA54323.1	rplD	SAMN04488511_11399	SAMN04488511_109138	ATP-binding cassette, subfamily F, member 3.	LSU ribosomal protein L4P; Forms part of the polypeptide exit tunnel.	0.853
SFA54323.1	rplM	SAMN04488511_11399	SAMN04488511_10746	ATP-binding cassette, subfamily F, member 3.	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.850
SFA54323.1	rplP	SAMN04488511_11399	SAMN04488511_109132	ATP-binding cassette, subfamily F, member 3.	Large subunit ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family.	0.844
SFA54323.1	rplR	SAMN04488511_11399	SAMN04488511_109123	ATP-binding cassette, subfamily F, member 3.	Large subunit ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.	0.847
SFA54323.1	rplU	SAMN04488511_11399	SAMN04488511_12068	ATP-binding cassette, subfamily F, member 3.	LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.851
SFA54323.1	rpmD	SAMN04488511_11399	SAMN04488511_109121	ATP-binding cassette, subfamily F, member 3.	LSU ribosomal protein L30P.	0.844
SFA54323.1	rpmH	SAMN04488511_11399	SAMN04488511_102124	ATP-binding cassette, subfamily F, member 3.	LSU ribosomal protein L34P; Belongs to the bacterial ribosomal protein bL34 family.	0.847
SFA54323.1	rpsC	SAMN04488511_11399	SAMN04488511_109133	ATP-binding cassette, subfamily F, member 3.	SSU ribosomal protein S3P; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.850
SFA54323.1	rpsO	SAMN04488511_11399	SAMN04488511_101371	ATP-binding cassette, subfamily F, member 3.	Small subunit ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.851
rplC	SFA54323.1	SAMN04488511_109139	SAMN04488511_11399	Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	ATP-binding cassette, subfamily F, member 3.	0.846
rplC	rplD	SAMN04488511_109139	SAMN04488511_109138	Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	LSU ribosomal protein L4P; Forms part of the polypeptide exit tunnel.	0.999
rplC	rplM	SAMN04488511_109139	SAMN04488511_10746	Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.999
rplC	rplP	SAMN04488511_109139	SAMN04488511_109132	Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Large subunit ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family.	0.999
rplC	rplR	SAMN04488511_109139	SAMN04488511_109123	Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Large subunit ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.	0.999
rplC	rplU	SAMN04488511_109139	SAMN04488511_12068	Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.998
rplC	rpmD	SAMN04488511_109139	SAMN04488511_109121	Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	LSU ribosomal protein L30P.	0.999
rplC	rpmH	SAMN04488511_109139	SAMN04488511_102124	Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	LSU ribosomal protein L34P; Belongs to the bacterial ribosomal protein bL34 family.	0.988
rplC	rpsC	SAMN04488511_109139	SAMN04488511_109133	Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	SSU ribosomal protein S3P; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.999
rplC	rpsO	SAMN04488511_109139	SAMN04488511_101371	Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Small subunit ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.998