STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFA55090.1PRTRC system protein C. (72 aa)    
Predicted Functional Partners:
SFA55078.1
PRTRC system ThiF family protein.
 
     0.942
SFA55082.1
PRTRC system protein B.
 
     0.942
SFA55095.1
PRTRC system protein E.
 
     0.941
SFA55105.1
Phage/plasmid-like protein TIGR03299.
 
     0.901
SFA55109.1
Single-strand DNA-binding protein.
 
     0.780
SFA41037.1
Phage/plasmid-like protein TIGR03299.
 
     0.764
SFA58449.1
Phage/plasmid-like protein TIGR03299.
 
     0.764
SFA55088.1
Hypothetical protein.
       0.757
SFA55101.1
Hypothetical protein.
       0.727
SFA58531.1
Type IV secretory system Conjugative DNA transfer.
  
     0.694
Your Current Organism:
Pedobacter suwonensis
NCBI taxonomy Id: 332999
Other names: DSM 18130, KACC 11317, P. suwonensis, Pedobacter suwonensis Kwon et al. 2007, strain 15-52
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.