STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFA55644.1Aspartyl/Asparaginyl beta-hydroxylase. (398 aa)    
Predicted Functional Partners:
SFA55648.1
Phytanoyl-CoA dioxygenase (PhyH).
 
  
 0.926
SFA55629.1
Microcystin-dependent protein.
 
     0.874
SFA55624.1
Microcystin-dependent protein.
 
     0.863
SFA55621.1
Microcystin-dependent protein.
 
     0.846
SFA55642.1
Carbamoyltransferase.
      0.843
SFA55635.1
ABC-type branched-chain amino acid transport system, substrate-binding protein.
 
     0.757
SFA55658.1
Methyltransferase domain-containing protein.
 
  
 0.683
SFA55618.1
Ig-like domain (group 3).
 
     0.662
SFA55630.1
methionyl-tRNA formyltransferase.
 
  
  0.620
SFA55638.1
PKHD-type hydroxylase.
 
     0.592
Your Current Organism:
Pedobacter suwonensis
NCBI taxonomy Id: 332999
Other names: DSM 18130, KACC 11317, P. suwonensis, Pedobacter suwonensis Kwon et al. 2007, strain 15-52
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.