STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KHF38698.1c-di-GMP phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (212 aa)    
Predicted Functional Partners:
KHF38142.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.956
KHF39406.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.948
KHF39135.1
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
0.936
KHF40870.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.875
KHF42030.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.865
KHF38958.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.809
KHF39210.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.800
KHF40468.1
Chemotaxis protein CheV; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.776
KHF40288.1
Chemotaxis protein CheV; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.776
KHF41137.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.762
Your Current Organism:
Bacillus okhensis
NCBI taxonomy Id: 333138
Other names: B. okhensis, Bacillus okhensis Nowlan et al. 2006, JCM 13040, strain Kh10-101
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.