STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KHF38520.1C4-dicarboxylate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (435 aa)    
Predicted Functional Partners:
KHF38742.1
C4-dicarboxylate ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  0.907
KHF39447.1
C4-dicarboxylate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  0.904
KHF38944.1
C4-dicarboxylate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.897
KHF39567.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.889
KHF39448.1
C4-dicarboxylate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.888
KHF39465.1
2,3-diketo-L-gulonate TRAP transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.888
KHF39568.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.873
KHF39424.1
C4-dicarboxylate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
  0.863
KHF39512.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.841
KHF40153.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.827
Your Current Organism:
Bacillus okhensis
NCBI taxonomy Id: 333138
Other names: B. okhensis, Bacillus okhensis Nowlan et al. 2006, JCM 13040, strain Kh10-101
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.