STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KYG77259.1Permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (406 aa)    
Predicted Functional Partners:
KYG77256.1
DUF4440 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.893
KYG77257.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.838
KYG77254.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
     0.786
KYG77260.1
ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.775
KYG77258.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.757
KYG77255.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.698
KYG77252.1
Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.688
KYG77251.1
Cation transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
     0.660
KYG77253.1
Efflux transporter periplasmic adaptor subunit; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
     0.660
KYG77507.1
DUF4440 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.609
Your Current Organism:
Roseivirga spongicola
NCBI taxonomy Id: 333140
Other names: Flexibacteraceae bacterium UST030701-084, JCM 13337, NRRL B-41219, R. spongicola, Roseivirga spongicola Lau et al. 2006 emend. Hahnke et al. 2016, strain UST030701-084
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.