DUI87_31644 protein (Hirundo rustica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

DUI87_31644

Uncharacterized protein. (722 aa)

Predicted Functional Partners:

DUI87_17465

0.906

DUI87_12352

0.906

DUI87_00652

0.894

DUI87_05726

0.893

DUI87_22675

0.856

DUI87_16771

0.856

DUI87_10206

0.856

DUI87_12321

0.856

DUI87_14925

0.856

DUI87_26709

0.827

Your Current Organism:

Hirundo rustica

NCBI taxonomy Id: 333673
Other names: H. rustica rustica, Hirundo rustica rustica

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DUI87_00652	DUI87_05726	A0A3M0LHB5	A0A3M0KV34	Uncharacterized protein.	Uncharacterized protein.	0.888
DUI87_00652	DUI87_10206	A0A3M0LHB5	A0A3M0KHJ4	Uncharacterized protein.	Tcp10_C domain-containing protein.	0.997
DUI87_00652	DUI87_12321	A0A3M0LHB5	A0A3M0KI03	Uncharacterized protein.	Uncharacterized protein.	0.997
DUI87_00652	DUI87_12352	A0A3M0LHB5	A0A3M0KDP5	Uncharacterized protein.	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	0.999
DUI87_00652	DUI87_14925	A0A3M0LHB5	A0A3M0KNA5	Uncharacterized protein.	Uncharacterized protein.	0.997
DUI87_00652	DUI87_16771	A0A3M0LHB5	A0A3M0K2E1	Uncharacterized protein.	Tcp10_C domain-containing protein.	0.997
DUI87_00652	DUI87_17465	A0A3M0LHB5	A0A3M0K499	Uncharacterized protein.	Clathrin-link domain-containing protein.	0.999
DUI87_00652	DUI87_22675	A0A3M0LHB5	A0A3M0JIL6	Uncharacterized protein.	Uncharacterized protein.	0.997
DUI87_00652	DUI87_26709	A0A3M0LHB5	A0A3M0J6U2	Uncharacterized protein.	Clathrin light chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin light chain family.	0.999
DUI87_00652	DUI87_31644	A0A3M0LHB5	A0A3M0ITE8	Uncharacterized protein.	Uncharacterized protein.	0.894
DUI87_05726	DUI87_00652	A0A3M0KV34	A0A3M0LHB5	Uncharacterized protein.	Uncharacterized protein.	0.888
DUI87_05726	DUI87_10206	A0A3M0KV34	A0A3M0KHJ4	Uncharacterized protein.	Tcp10_C domain-containing protein.	0.999
DUI87_05726	DUI87_12321	A0A3M0KV34	A0A3M0KI03	Uncharacterized protein.	Uncharacterized protein.	0.999
DUI87_05726	DUI87_12352	A0A3M0KV34	A0A3M0KDP5	Uncharacterized protein.	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	0.997
DUI87_05726	DUI87_14925	A0A3M0KV34	A0A3M0KNA5	Uncharacterized protein.	Uncharacterized protein.	0.999
DUI87_05726	DUI87_16771	A0A3M0KV34	A0A3M0K2E1	Uncharacterized protein.	Tcp10_C domain-containing protein.	0.999
DUI87_05726	DUI87_17465	A0A3M0KV34	A0A3M0K499	Uncharacterized protein.	Clathrin-link domain-containing protein.	0.997
DUI87_05726	DUI87_22675	A0A3M0KV34	A0A3M0JIL6	Uncharacterized protein.	Uncharacterized protein.	0.999
DUI87_05726	DUI87_26709	A0A3M0KV34	A0A3M0J6U2	Uncharacterized protein.	Clathrin light chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin light chain family.	0.993
DUI87_05726	DUI87_31644	A0A3M0KV34	A0A3M0ITE8	Uncharacterized protein.	Uncharacterized protein.	0.893