DUI87_10401 protein (Hirundo rustica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

DUI87_10401

Uncharacterized protein. (355 aa)

Predicted Functional Partners:

DUI87_00282

0.999

DUI87_15445

0.993

DUI87_12517

0.993

DUI87_14716

0.976

DUI87_22952

0.965

DUI87_13123

0.965

DUI87_31790

0.956

DUI87_16272

0.927

DUI87_13178

0.925

DUI87_33007

0.924

Your Current Organism:

Hirundo rustica

NCBI taxonomy Id: 333673
Other names: H. rustica rustica, Hirundo rustica rustica

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DUI87_00282	DUI87_10401	A0A3M0LBC7	A0A3M0KIJ4	Uncharacterized protein.	Uncharacterized protein.	0.999
DUI87_00282	DUI87_12517	A0A3M0LBC7	A0A3M0KCI3	Uncharacterized protein.	Pex2_Pex12 domain-containing protein.	0.992
DUI87_00282	DUI87_13123	A0A3M0LBC7	A0A3M0KCR2	Uncharacterized protein.	Uncharacterized protein.	0.985
DUI87_00282	DUI87_13178	A0A3M0LBC7	A0A3M0KBB5	Uncharacterized protein.	DUF4097 domain-containing protein.	0.989
DUI87_00282	DUI87_14716	A0A3M0LBC7	A0A3M0K5K9	Uncharacterized protein.	Uncharacterized protein.	0.988
DUI87_00282	DUI87_15445	A0A3M0LBC7	A0A3M0K435	Uncharacterized protein.	SH3 domain-containing protein.	0.999
DUI87_00282	DUI87_16272	A0A3M0LBC7	A0A3M0K693	Uncharacterized protein.	Claudin; Plays a major role in tight junction-specific obliteration of the intercellular space, through calcium-independent cell-adhesion activity; Belongs to the claudin family.	0.939
DUI87_00282	DUI87_22952	A0A3M0LBC7	A0A3M0JMS1	Uncharacterized protein.	Peroxisomal membrane protein PEX16.	0.990
DUI87_00282	DUI87_31790	A0A3M0LBC7	A0A3M0IQ35	Uncharacterized protein.	Pex14_N domain-containing protein.	0.998
DUI87_00282	DUI87_33007	A0A3M0LBC7	A0A3M0IQI9	Uncharacterized protein.	Uncharacterized protein.	0.988
DUI87_10401	DUI87_00282	A0A3M0KIJ4	A0A3M0LBC7	Uncharacterized protein.	Uncharacterized protein.	0.999
DUI87_10401	DUI87_12517	A0A3M0KIJ4	A0A3M0KCI3	Uncharacterized protein.	Pex2_Pex12 domain-containing protein.	0.993
DUI87_10401	DUI87_13123	A0A3M0KIJ4	A0A3M0KCR2	Uncharacterized protein.	Uncharacterized protein.	0.965
DUI87_10401	DUI87_13178	A0A3M0KIJ4	A0A3M0KBB5	Uncharacterized protein.	DUF4097 domain-containing protein.	0.925
DUI87_10401	DUI87_14716	A0A3M0KIJ4	A0A3M0K5K9	Uncharacterized protein.	Uncharacterized protein.	0.976
DUI87_10401	DUI87_15445	A0A3M0KIJ4	A0A3M0K435	Uncharacterized protein.	SH3 domain-containing protein.	0.993
DUI87_10401	DUI87_16272	A0A3M0KIJ4	A0A3M0K693	Uncharacterized protein.	Claudin; Plays a major role in tight junction-specific obliteration of the intercellular space, through calcium-independent cell-adhesion activity; Belongs to the claudin family.	0.927
DUI87_10401	DUI87_22952	A0A3M0KIJ4	A0A3M0JMS1	Uncharacterized protein.	Peroxisomal membrane protein PEX16.	0.965
DUI87_10401	DUI87_31790	A0A3M0KIJ4	A0A3M0IQ35	Uncharacterized protein.	Pex14_N domain-containing protein.	0.956
DUI87_10401	DUI87_33007	A0A3M0KIJ4	A0A3M0IQI9	Uncharacterized protein.	Uncharacterized protein.	0.924