node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
RsmB | TrkA | GCA_900061445_00035 | GCA_900061445_00034 | Unannotated protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | Unannotated protein. | 0.851 |
RsmB | arnA | GCA_900061445_00035 | GCA_900061445_02407 | Unannotated protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | Unannotated protein; Bifunctional enzyme that catalyzes the oxidative decarboxylation of UDP-glucuronic acid (UDP-GlcUA) to UDP-4-keto- arabinose (UDP-Ara4O) and the addition of a formyl group to UDP-4- amino-4-deoxy-L-arabinose (UDP-L-Ara4N) to form UDP-L-4-formamido- arabinose (UDP-L-Ara4FN). The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides; In the N-terminal section; belongs to the Fmt family. UDP- L-Ara4N formyltransferase subfamily. | 0.822 |
RsmB | fmt | GCA_900061445_00035 | GCA_900061445_00036 | Unannotated protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | Unannotated protein; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family. | 0.953 |
RsmB | rlmE | GCA_900061445_00035 | GCA_900061445_01212 | Unannotated protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | Unannotated protein; Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit. | 0.900 |
RsmB | rplC | GCA_900061445_00035 | GCA_900061445_00004 | Unannotated protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | Unannotated protein; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.812 |
RsmB | rplJ | GCA_900061445_00035 | GCA_900061445_00457 | Unannotated protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | Unannotated protein; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. | 0.867 |
RsmB | rplV | GCA_900061445_00035 | GCA_900061445_00009 | Unannotated protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | Unannotated protein; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. | 0.806 |
RsmB | rplX | GCA_900061445_00035 | GCA_900061445_00015 | Unannotated protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | Unannotated protein; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit. | 0.835 |
RsmB | rpmD | GCA_900061445_00035 | GCA_900061445_00022 | Unannotated protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | Unannotated protein. | 0.818 |
RsmB | thiI | GCA_900061445_00035 | GCA_900061445_00898 | Unannotated protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | Unannotated protein; Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS. | 0.849 |
TrkA | RsmB | GCA_900061445_00034 | GCA_900061445_00035 | Unannotated protein. | Unannotated protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | 0.851 |
TrkA | fmt | GCA_900061445_00034 | GCA_900061445_00036 | Unannotated protein. | Unannotated protein; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family. | 0.586 |
arnA | RsmB | GCA_900061445_02407 | GCA_900061445_00035 | Unannotated protein; Bifunctional enzyme that catalyzes the oxidative decarboxylation of UDP-glucuronic acid (UDP-GlcUA) to UDP-4-keto- arabinose (UDP-Ara4O) and the addition of a formyl group to UDP-4- amino-4-deoxy-L-arabinose (UDP-L-Ara4N) to form UDP-L-4-formamido- arabinose (UDP-L-Ara4FN). The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides; In the N-terminal section; belongs to the Fmt family. UDP- L-Ara4N formyltransferase subfamily. | Unannotated protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | 0.822 |
arnA | rplC | GCA_900061445_02407 | GCA_900061445_00004 | Unannotated protein; Bifunctional enzyme that catalyzes the oxidative decarboxylation of UDP-glucuronic acid (UDP-GlcUA) to UDP-4-keto- arabinose (UDP-Ara4O) and the addition of a formyl group to UDP-4- amino-4-deoxy-L-arabinose (UDP-L-Ara4N) to form UDP-L-4-formamido- arabinose (UDP-L-Ara4FN). The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides; In the N-terminal section; belongs to the Fmt family. UDP- L-Ara4N formyltransferase subfamily. | Unannotated protein; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.689 |
arnA | rplJ | GCA_900061445_02407 | GCA_900061445_00457 | Unannotated protein; Bifunctional enzyme that catalyzes the oxidative decarboxylation of UDP-glucuronic acid (UDP-GlcUA) to UDP-4-keto- arabinose (UDP-Ara4O) and the addition of a formyl group to UDP-4- amino-4-deoxy-L-arabinose (UDP-L-Ara4N) to form UDP-L-4-formamido- arabinose (UDP-L-Ara4FN). The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides; In the N-terminal section; belongs to the Fmt family. UDP- L-Ara4N formyltransferase subfamily. | Unannotated protein; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. | 0.409 |
arnA | rplV | GCA_900061445_02407 | GCA_900061445_00009 | Unannotated protein; Bifunctional enzyme that catalyzes the oxidative decarboxylation of UDP-glucuronic acid (UDP-GlcUA) to UDP-4-keto- arabinose (UDP-Ara4O) and the addition of a formyl group to UDP-4- amino-4-deoxy-L-arabinose (UDP-L-Ara4N) to form UDP-L-4-formamido- arabinose (UDP-L-Ara4FN). The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides; In the N-terminal section; belongs to the Fmt family. UDP- L-Ara4N formyltransferase subfamily. | Unannotated protein; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. | 0.669 |
arnA | rplX | GCA_900061445_02407 | GCA_900061445_00015 | Unannotated protein; Bifunctional enzyme that catalyzes the oxidative decarboxylation of UDP-glucuronic acid (UDP-GlcUA) to UDP-4-keto- arabinose (UDP-Ara4O) and the addition of a formyl group to UDP-4- amino-4-deoxy-L-arabinose (UDP-L-Ara4N) to form UDP-L-4-formamido- arabinose (UDP-L-Ara4FN). The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides; In the N-terminal section; belongs to the Fmt family. UDP- L-Ara4N formyltransferase subfamily. | Unannotated protein; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit. | 0.698 |
arnA | rpmD | GCA_900061445_02407 | GCA_900061445_00022 | Unannotated protein; Bifunctional enzyme that catalyzes the oxidative decarboxylation of UDP-glucuronic acid (UDP-GlcUA) to UDP-4-keto- arabinose (UDP-Ara4O) and the addition of a formyl group to UDP-4- amino-4-deoxy-L-arabinose (UDP-L-Ara4N) to form UDP-L-4-formamido- arabinose (UDP-L-Ara4FN). The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides; In the N-terminal section; belongs to the Fmt family. UDP- L-Ara4N formyltransferase subfamily. | Unannotated protein. | 0.761 |
fmt | RsmB | GCA_900061445_00036 | GCA_900061445_00035 | Unannotated protein; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family. | Unannotated protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | 0.953 |
fmt | TrkA | GCA_900061445_00036 | GCA_900061445_00034 | Unannotated protein; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family. | Unannotated protein. | 0.586 |