STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFL40680.1YheC/D like ATP-grasp. (418 aa)    
Predicted Functional Partners:
SFL95339.1
Protein of unknown function.
  
     0.636
SFM05207.1
Forespore regulator of the sigma-K checkpoint.
  
     0.636
SFL40702.1
Hypothetical protein.
       0.634
SFM36080.1
Spore coat protein E.
  
    0.614
SFM00695.1
Sporulation lipoprotein, YhcN/YlaJ family.
  
    0.577
SFL40659.1
Uncharacterized membrane protein YheB, UPF0754 family.
       0.576
SFL85831.1
Hypothetical protein.
  
     0.562
SFM38799.1
Uncharacterized protein YunC, DUF1805 family.
  
     0.556
SFL80425.1
Protein of unknown function.
  
     0.543
SFL84520.1
Spore coat protein JA.
  
    0.538
Your Current Organism:
Gracilibacillus orientalis
NCBI taxonomy Id: 334253
Other names: AS 1.4250, CCM 7326, CECT 7097, G. orientalis, Gracilibacillus orientalis Carrasco et al. 2006, Gracilibacillus sp. EJ-15, Gracilibacillus sp. XH-62, Gracilibacillus sp. XH-63, strain XH-63
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.