STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFL98557.1DNA-binding transcriptional regulator, Lrp family. (144 aa)    
Predicted Functional Partners:
birA
Bifunctional ligase/repressor BirA; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
  
 
 0.778
SFM39614.1
Para-aminobenzoate synthetase / 4-amino-4-deoxychorismate lyase.
     
 0.721
SFM39591.1
Anthranilate synthase component 2.
   
 
  0.683
SFL71790.1
PTS system, beta-glucosides-specific IIC component.
   
 
  0.671
SFM49979.1
PTS system, D-glucosamine-specific IIC component.
   
 
  0.671
SFL94283.1
Radical SAM/CxCxxxxC motif protein YfkAB.
  
 
 0.520
SFL98535.1
AAA domain-containing protein.
       0.516
SFM37349.1
Glutamate synthase (NADPH/NADH) large chain.
     
 0.489
SFM02149.1
Precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase.
    
  0.439
leuD
3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. Belongs to the LeuD family. LeuD type 1 subfamily.
    
  0.438
Your Current Organism:
Gracilibacillus orientalis
NCBI taxonomy Id: 334253
Other names: AS 1.4250, CCM 7326, CECT 7097, G. orientalis, Gracilibacillus orientalis Carrasco et al. 2006, Gracilibacillus sp. EJ-15, Gracilibacillus sp. XH-62, Gracilibacillus sp. XH-63, strain XH-63
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.