STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFM04996.1Post-transcriptional regulator. (98 aa)    
Predicted Functional Partners:
secD
SecD/SecF fusion protein; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily.
 
    0.705
SFM22178.1
Tetratricopeptide repeat-containing protein.
  
     0.672
SFM07729.1
Hypothetical protein.
  
     0.663
SFL82089.1
Hypothetical protein.
  
    0.658
SFM17416.1
Uncharacterized beta-barrel protein YwiB, DUF1934 family.
  
     0.633
SFL82420.1
Competence protein ComGD.
  
     0.610
SFM06196.1
Hypothetical protein.
  
     0.606
SFM05015.1
Stage V sporulation protein B.
 
     0.592
SFL74182.1
Two-component signal transduction system YycFG, regulatory protein YycI.
  
     0.564
SFM06064.1
Hypothetical protein.
  
     0.557
Your Current Organism:
Gracilibacillus orientalis
NCBI taxonomy Id: 334253
Other names: AS 1.4250, CCM 7326, CECT 7097, G. orientalis, Gracilibacillus orientalis Carrasco et al. 2006, Gracilibacillus sp. EJ-15, Gracilibacillus sp. XH-62, Gracilibacillus sp. XH-63, strain XH-63
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.