STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFM13676.1Putative solute:sodium symporter small subunit. (91 aa)    
Predicted Functional Partners:
SFM13659.1
Cation/acetate symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
 
    0.935
SFL94564.1
CBS domain-containing protein.
 
     0.755
SFM13730.1
Cation/acetate symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
 
    0.648
SFM13642.1
Hypothetical protein.
       0.579
SFM13711.1
Two-component system, LytT family, sensor histidine kinase LytS.
       0.445
SFM13695.1
Two component transcriptional regulator, LytTR family.
       0.420
SFM13753.1
Hypothetical protein.
       0.416
Your Current Organism:
Gracilibacillus orientalis
NCBI taxonomy Id: 334253
Other names: AS 1.4250, CCM 7326, CECT 7097, G. orientalis, Gracilibacillus orientalis Carrasco et al. 2006, Gracilibacillus sp. EJ-15, Gracilibacillus sp. XH-62, Gracilibacillus sp. XH-63, strain XH-63
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