Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| SFM18696.1 | rplC | SAMN04487943_109135 | SAMN04487943_11727 | ATPase components of ABC transporters with duplicated ATPase domains. | LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 0.758 |
| SFM18696.1 | rplD | SAMN04487943_109135 | SAMN04487943_11728 | ATPase components of ABC transporters with duplicated ATPase domains. | LSU ribosomal protein L4P; Forms part of the polypeptide exit tunnel. | 0.778 |
| SFM18696.1 | rplM | SAMN04487943_109135 | SAMN04487943_11759 | ATPase components of ABC transporters with duplicated ATPase domains. | Large subunit ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.768 |
| SFM18696.1 | rplN | SAMN04487943_109135 | SAMN04487943_11737 | ATPase components of ABC transporters with duplicated ATPase domains. | LSU ribosomal protein L14P; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. | 0.782 |
| SFM18696.1 | rplR | SAMN04487943_109135 | SAMN04487943_11743 | ATPase components of ABC transporters with duplicated ATPase domains. | Large subunit ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | 0.758 |
| SFM18696.1 | rplT | SAMN04487943_109135 | SAMN04487943_107146 | ATPase components of ABC transporters with duplicated ATPase domains. | Large subunit ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.759 |
| SFM18696.1 | rplU | SAMN04487943_109135 | SAMN04487943_10728 | ATPase components of ABC transporters with duplicated ATPase domains. | Large subunit ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.770 |
| SFM18696.1 | rpmH | SAMN04487943_109135 | SAMN04487943_103403 | ATPase components of ABC transporters with duplicated ATPase domains. | LSU ribosomal protein L34P; Belongs to the bacterial ribosomal protein bL34 family. | 0.758 |
| SFM18696.1 | rpsC | SAMN04487943_109135 | SAMN04487943_11733 | ATPase components of ABC transporters with duplicated ATPase domains. | Small subunit ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.769 |
| SFM18696.1 | rpsO | SAMN04487943_109135 | SAMN04487943_11325 | ATPase components of ABC transporters with duplicated ATPase domains. | Small subunit ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.770 |
| rplC | SFM18696.1 | SAMN04487943_11727 | SAMN04487943_109135 | LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | ATPase components of ABC transporters with duplicated ATPase domains. | 0.758 |
| rplC | rplD | SAMN04487943_11727 | SAMN04487943_11728 | LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | LSU ribosomal protein L4P; Forms part of the polypeptide exit tunnel. | 0.999 |
| rplC | rplM | SAMN04487943_11727 | SAMN04487943_11759 | LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | Large subunit ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.999 |
| rplC | rplN | SAMN04487943_11727 | SAMN04487943_11737 | LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | LSU ribosomal protein L14P; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. | 0.999 |
| rplC | rplR | SAMN04487943_11727 | SAMN04487943_11743 | LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | Large subunit ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | 0.999 |
| rplC | rplT | SAMN04487943_11727 | SAMN04487943_107146 | LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | Large subunit ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.997 |
| rplC | rplU | SAMN04487943_11727 | SAMN04487943_10728 | LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | Large subunit ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.997 |
| rplC | rpmH | SAMN04487943_11727 | SAMN04487943_103403 | LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | LSU ribosomal protein L34P; Belongs to the bacterial ribosomal protein bL34 family. | 0.963 |
| rplC | rpsC | SAMN04487943_11727 | SAMN04487943_11733 | LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | Small subunit ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.999 |
| rplC | rpsO | SAMN04487943_11727 | SAMN04487943_11325 | LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | Small subunit ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.996 |
page 1 of 6