STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFM16196.1Putative DeoR family transcriptional regulator, stage III sporulation protein D. (96 aa)    
Predicted Functional Partners:
SFL82854.1
Stage III sporulation protein AE.
  
    0.931
SFL84945.1
Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat.
  
  
 0.842
SFM49935.1
AbrB family transcriptional regulator, stage V sporulation protein T.
  
  
 0.824
SFM16729.1
Stage II sporulation protein R.
  
   
 0.816
SFL82896.1
Stage III sporulation protein AG.
  
  
 0.812
SFL82769.1
Stage III sporulation protein AA.
  
   
 0.811
SFL82813.1
Stage III sporulation protein AC.
  
  
 0.811
SFL99821.1
RNA polymerase, sigma subunit, RpsG/SigG; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
  
  
 0.808
SFM00307.1
Sporulation integral membrane protein YlbJ.
  
  
 0.808
SFL81356.1
Similar to stage IV sporulation protein.
  
   
 0.807
Your Current Organism:
Gracilibacillus orientalis
NCBI taxonomy Id: 334253
Other names: AS 1.4250, CCM 7326, CECT 7097, G. orientalis, Gracilibacillus orientalis Carrasco et al. 2006, Gracilibacillus sp. EJ-15, Gracilibacillus sp. XH-62, Gracilibacillus sp. XH-63, strain XH-63
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