STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFM29456.1Spore germination protein KA. (522 aa)    
Predicted Functional Partners:
SFM29428.1
Spore germination protein KC.
    0.938
SFM29444.1
Spore germination protein KB.
 
    0.937
SFM01513.1
Stage V sporulation protein AD.
  
    0.780
SFM01494.1
Stage V sporulation protein AC.
  
    0.777
SFL83255.1
Stage IV sporulation protein B.
  
     0.774
gpr
GPR endopeptidase. Aspartic peptidase. MEROPS family A25; Initiates the rapid degradation of small, acid-soluble proteins during spore germination; Belongs to the peptidase A25 family.
  
    0.774
SFM33512.1
Spore germination protein KC.
 
    0.774
SFM49289.1
Spore germination protein KC.
 
    0.774
SFM01528.1
Stage V sporulation protein AE.
  
    0.773
SFM49935.1
AbrB family transcriptional regulator, stage V sporulation protein T.
  
     0.773
Your Current Organism:
Gracilibacillus orientalis
NCBI taxonomy Id: 334253
Other names: AS 1.4250, CCM 7326, CECT 7097, G. orientalis, Gracilibacillus orientalis Carrasco et al. 2006, Gracilibacillus sp. EJ-15, Gracilibacillus sp. XH-62, Gracilibacillus sp. XH-63, strain XH-63
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.