STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFM29623.1Poly-gamma-glutamate synthesis protein (capsule biosynthesis protein). (382 aa)    
Predicted Functional Partners:
SFL84119.1
D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.
 
      0.755
SFM29640.1
Putative membrane protein.
       0.741
SFM27179.1
D-alanine-D-alanine ligase.
    
  0.715
SFM27224.1
D-alanine-D-alanine ligase.
    
  0.715
SFM27237.1
D-alanine-D-alanine ligase.
    
  0.715
SFM29586.1
Acetoin utilization transport system permease protein.
       0.533
SFM29606.1
Acetoin utilization transport system ATP-binding protein.
       0.533
SFM29655.1
Thiol-disulfide isomerase or thioredoxin.
       0.532
SFL93543.1
Nicotinate phosphoribosyltransferase; Catalyzes the first step in the biosynthesis of NAD from nicotinic acid, the ATP-dependent synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate. Belongs to the NAPRTase family.
  
    0.506
SFL40863.1
D-alanyl-D-alanine carboxypeptidase.
      0.482
Your Current Organism:
Gracilibacillus orientalis
NCBI taxonomy Id: 334253
Other names: AS 1.4250, CCM 7326, CECT 7097, G. orientalis, Gracilibacillus orientalis Carrasco et al. 2006, Gracilibacillus sp. EJ-15, Gracilibacillus sp. XH-62, Gracilibacillus sp. XH-63, strain XH-63
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