Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFL41517.1 | SFM28298.1 | SAMN04487943_101436 | SAMN04487943_1126 | Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase. | Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline. | 0.529 |
SFL41517.1 | SFM35080.1 | SAMN04487943_101436 | SAMN04487943_11477 | Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase. | Predicted amino acid racemase. | 0.422 |
SFL41517.1 | lysA | SAMN04487943_101436 | SAMN04487943_104250 | Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase. | Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine. | 0.514 |
SFL59078.1 | SFM28298.1 | SAMN04487943_102352 | SAMN04487943_1126 | Acetylornithine deacetylase. | Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline. | 0.845 |
SFL59078.1 | SFM35080.1 | SAMN04487943_102352 | SAMN04487943_11477 | Acetylornithine deacetylase. | Predicted amino acid racemase. | 0.632 |
SFL59078.1 | lysA | SAMN04487943_102352 | SAMN04487943_104250 | Acetylornithine deacetylase. | Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine. | 0.514 |
SFL69665.1 | SFL69711.1 | SAMN04487943_103150 | SAMN04487943_103153 | Siderophore synthetase component. | Siderophore synthetase component. | 0.956 |
SFL69665.1 | SFM35080.1 | SAMN04487943_103150 | SAMN04487943_11477 | Siderophore synthetase component. | Predicted amino acid racemase. | 0.466 |
SFL69665.1 | lysA | SAMN04487943_103150 | SAMN04487943_104250 | Siderophore synthetase component. | Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine. | 0.712 |
SFL69711.1 | SFL69665.1 | SAMN04487943_103153 | SAMN04487943_103150 | Siderophore synthetase component. | Siderophore synthetase component. | 0.956 |
SFL69711.1 | SFM35080.1 | SAMN04487943_103153 | SAMN04487943_11477 | Siderophore synthetase component. | Predicted amino acid racemase. | 0.466 |
SFL69711.1 | lysA | SAMN04487943_103153 | SAMN04487943_104250 | Siderophore synthetase component. | Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine. | 0.712 |
SFM08034.1 | SFM35080.1 | SAMN04487943_107178 | SAMN04487943_11477 | DNA polymerase-3 subunit alpha. | Predicted amino acid racemase. | 0.471 |
SFM14221.1 | SFM28298.1 | SAMN04487943_108173 | SAMN04487943_1126 | Acetylornithine deacetylase. | Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline. | 0.703 |
SFM14221.1 | SFM35080.1 | SAMN04487943_108173 | SAMN04487943_11477 | Acetylornithine deacetylase. | Predicted amino acid racemase. | 0.422 |
SFM14221.1 | lysA | SAMN04487943_108173 | SAMN04487943_104250 | Acetylornithine deacetylase. | Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine. | 0.514 |
SFM28298.1 | SFL41517.1 | SAMN04487943_1126 | SAMN04487943_101436 | Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline. | Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase. | 0.529 |
SFM28298.1 | SFL59078.1 | SAMN04487943_1126 | SAMN04487943_102352 | Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline. | Acetylornithine deacetylase. | 0.845 |
SFM28298.1 | SFM14221.1 | SAMN04487943_1126 | SAMN04487943_108173 | Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline. | Acetylornithine deacetylase. | 0.703 |
SFM28298.1 | SFM35080.1 | SAMN04487943_1126 | SAMN04487943_11477 | Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline. | Predicted amino acid racemase. | 0.674 |
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