STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFM38799.1Uncharacterized protein YunC, DUF1805 family. (101 aa)    
Predicted Functional Partners:
SFL82547.1
Protein YqhG of unknown function.
  
     0.732
SFL98639.1
Uncharacterized damage-inducible protein DinB (forms a four-helix bundle).
  
     0.681
SFM50089.1
Spore cortex biosynthesis protein YabQ.
  
     0.660
SFL81905.1
MFS transporter, YQGE family, putative transporter.
  
     0.655
SFL81770.1
Hypothetical protein.
  
     0.646
SFL82872.1
Stage III sporulation protein AF.
  
     0.626
SFM29895.1
Outer membrane lipoprotein-sorting protein.
  
     0.615
SFL60062.1
Small, acid-soluble spore protein, alpha/beta type.
  
     0.610
SFM36080.1
Spore coat protein E.
  
     0.589
SFM05853.1
Spore coat protein YsxE.
  
     0.581
Your Current Organism:
Gracilibacillus orientalis
NCBI taxonomy Id: 334253
Other names: AS 1.4250, CCM 7326, CECT 7097, G. orientalis, Gracilibacillus orientalis Carrasco et al. 2006, Gracilibacillus sp. EJ-15, Gracilibacillus sp. XH-62, Gracilibacillus sp. XH-63, strain XH-63
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.