STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFM43377.1Sulfate permease, SulP family. (486 aa)    
Predicted Functional Partners:
SFL40498.1
DNA repair exonuclease SbcCD nuclease subunit.
   
   0.819
sbcD
Exodeoxyribonuclease I subunit D; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family.
   
   0.819
SFL57897.1
Protein of unknown function.
    
   0.805
SFL85290.1
Menaquinol-cytochrome c reductase cytochrome b subunit.
    
   0.805
SFL85308.1
Menaquinol-cytochrome c reductase cytochrome b/c subunit.
    
   0.805
SFL37603.1
AMP-binding enzyme C-terminal domain-containing protein; Belongs to the ATP-dependent AMP-binding enzyme family.
  
 
 0.788
SFL41706.1
Carbonic anhydrase.
  
 
 0.759
SFM43403.1
Nucleotide-binding universal stress protein, UspA family.
  
    0.748
SFM37349.1
Glutamate synthase (NADPH/NADH) large chain.
    
  0.745
SFL37484.1
Lichenysin synthetase C; Belongs to the ATP-dependent AMP-binding enzyme family.
   
 
 0.740
Your Current Organism:
Gracilibacillus orientalis
NCBI taxonomy Id: 334253
Other names: AS 1.4250, CCM 7326, CECT 7097, G. orientalis, Gracilibacillus orientalis Carrasco et al. 2006, Gracilibacillus sp. EJ-15, Gracilibacillus sp. XH-62, Gracilibacillus sp. XH-63, strain XH-63
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