STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFM46845.12-keto-3-deoxygluconate permease (TC 2.A.10.1.1). (328 aa)    
Predicted Functional Partners:
SFM46871.1
Uncharacterized conserved protein YgbK, DUF1537 family.
 
   
 0.934
SFM46888.1
4-hydroxythreonine-4-phosphate dehydrogenase; Belongs to the PdxA family.
 
     0.921
SFM46821.1
Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding Fis domains.
 
     0.845
SFL52432.1
2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase.
  
  
 0.579
SFM19416.1
2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase.
  
  
 0.579
SFM13915.1
Levansucrase; Belongs to the glycosyl hydrolase 68 family.
  
     0.464
Your Current Organism:
Gracilibacillus orientalis
NCBI taxonomy Id: 334253
Other names: AS 1.4250, CCM 7326, CECT 7097, G. orientalis, Gracilibacillus orientalis Carrasco et al. 2006, Gracilibacillus sp. EJ-15, Gracilibacillus sp. XH-62, Gracilibacillus sp. XH-63, strain XH-63
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