STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFM50089.1Spore cortex biosynthesis protein YabQ. (187 aa)    
Predicted Functional Partners:
SFM50068.1
Sporulation protein YabP.
 
  
 0.975
SFM50110.1
Cell division protein DivIC.
 
    0.791
SFL75345.1
Inhibitor of the pro-sigma K processing machinery.
  
   
 0.783
SFM50041.1
Ribosomal 50S subunit-recycling heat shock protein, contains S4 domain.
  
    0.782
SFM50419.1
Ca-activated chloride channel family protein.
 
     0.775
SFM00423.1
Putative coat protein.
  
     0.772
SFL82689.1
Conserved membrane protein YqhR.
  
     0.771
SFL82547.1
Protein YqhG of unknown function.
  
     0.769
SFL36900.1
Protein of unknown function.
  
     0.766
SFL82872.1
Stage III sporulation protein AF.
  
    0.765
Your Current Organism:
Gracilibacillus orientalis
NCBI taxonomy Id: 334253
Other names: AS 1.4250, CCM 7326, CECT 7097, G. orientalis, Gracilibacillus orientalis Carrasco et al. 2006, Gracilibacillus sp. EJ-15, Gracilibacillus sp. XH-62, Gracilibacillus sp. XH-63, strain XH-63
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