Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
FMG_0077Conserved hypothetical protein. (344 aa)    
Predicted Functional Partners:
FMG_0078
Type I restriction-modification enzyme specificity subunit.
  
    0.913
FMG_0079
Type I restriction-modification enzyme restriction subunit; Subunit R is required for both nuclease and ATPase activities, but not for modification.
  
    0.901
FMG_0076
Type I restriction-modification system specificity subunit.
  
    0.891
FMG_0080
Zinc-dependent protease.
       0.777
FMG_0074
Putative type I restriction-modification system methylation subunit.
  
    0.725
FMG_0331
Conserved hypothetical protein.
  
    0.605
FMG_1372
Type I restriction-modification system restriction subunit; Subunit R is required for both nuclease and ATPase activities, but not for modification.
  
    0.605
FMG_1534
Type I restriction enzyme; Subunit R is required for both nuclease and ATPase activities, but not for modification.
  
    0.605
ligA
NAD-dependent DNA ligase; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA.
      0.599
FMG_1373
Type I restriction-modification system specificity subunit.
  
    0.596
Your Current Organism:
Finegoldia magna ATCC 29328
NCBI taxonomy Id: 334413
Other names: F. magna ATCC 29328, Finegoldia magna str. ATCC 29328, Finegoldia magna strain ATCC 29328
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