STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FMG_0100D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family. (312 aa)    
Predicted Functional Partners:
FMG_0103
D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.
 
  
  0.948
FMG_1490
D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.
  
  
  0.923
FMG_0897
Putative penicillin-binding protein 1A.
     
 0.910
FMG_1136
Conserved hypothetical protein.
     
 0.908
FMG_0613
Cell division protein; Penicillin-binding protein 2 homolog.
 
  
 0.538
serS
seryl-tRNA synthetase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec).
 
    0.537
FMG_0099
Hypothetical protein.
       0.487
FMG_0098
Hypothetical protein.
       0.472
FMG_1381
Putative esterase.
 
     0.400
Your Current Organism:
Finegoldia magna ATCC 29328
NCBI taxonomy Id: 334413
Other names: F. magna ATCC 29328, Finegoldia magna str. ATCC 29328, Finegoldia magna strain ATCC 29328
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