Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
FMG_0103D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family. (394 aa)    
Predicted Functional Partners:
FMG_0361
Putative penicillin-binding protein 2.
 
 
 0.952
FMG_0100
D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.
 
  
  0.948
FMG_0613
Cell division protein; Penicillin-binding protein 2 homolog.
 
 
 0.944
FMG_1028
Putative penicillin-binding protein.
  
 
 0.935
FMG_1490
D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.
 
  
 
0.928
FMG_1136
Conserved hypothetical protein.
    
 0.908
FMG_0897
Putative penicillin-binding protein 1A.
     
 0.907
FMG_0102
Putative glycosyltransferase.
       0.768
serS
seryl-tRNA synthetase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec).
  
    0.738
rlmH
Conserved hypothetical protein; Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA; Belongs to the RNA methyltransferase RlmH family.
 
  
 0.431
Your Current Organism:
Finegoldia magna ATCC 29328
NCBI taxonomy Id: 334413
Other names: F. magna ATCC 29328, Finegoldia magna str. ATCC 29328, Finegoldia magna strain ATCC 29328
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