FMG_0126 protein (Finegoldia magna ATCC 29328)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

FMG_0126

ABC transporter ATP-binding protein. (227 aa)

Predicted Functional Partners:

FMG_1053

0.989

FMG_0125

0.782

FMG_1187

0.706

FMG_1055

0.628

FMG_0124

0.580

FMG_0122

0.574

FMG_0123

0.505

FMG_0134

0.483

FMG_1112

0.481

FMG_0120

0.452

Your Current Organism:

Finegoldia magna ATCC 29328

NCBI taxonomy Id: 334413
Other names: F. magna ATCC 29328, Finegoldia magna str. ATCC 29328, Finegoldia magna strain ATCC 29328

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
FMG_0120	FMG_0122	Phosphate ABC transporter permease protein; Part of the binding-protein-dependent transport system for phosphate; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.	Phosphate ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	0.998
FMG_0120	FMG_0123	Phosphate ABC transporter permease protein; Part of the binding-protein-dependent transport system for phosphate; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.	Two-component response regulator.	0.687
FMG_0120	FMG_0124	Phosphate ABC transporter permease protein; Part of the binding-protein-dependent transport system for phosphate; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.	Two-component sensor histidine kinase.	0.687
FMG_0120	FMG_0125	Phosphate ABC transporter permease protein; Part of the binding-protein-dependent transport system for phosphate; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.	Conserved membrane spanning protein.	0.452
FMG_0120	FMG_0126	Phosphate ABC transporter permease protein; Part of the binding-protein-dependent transport system for phosphate; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.	ABC transporter ATP-binding protein.	0.452
FMG_0122	FMG_0120	Phosphate ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	Phosphate ABC transporter permease protein; Part of the binding-protein-dependent transport system for phosphate; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.	0.998
FMG_0122	FMG_0123	Phosphate ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	Two-component response regulator.	0.687
FMG_0122	FMG_0124	Phosphate ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	Two-component sensor histidine kinase.	0.688
FMG_0122	FMG_0125	Phosphate ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	Conserved membrane spanning protein.	0.452
FMG_0122	FMG_0126	Phosphate ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	ABC transporter ATP-binding protein.	0.574
FMG_0122	FMG_1053	Phosphate ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	ABC transporter permease protein.	0.827
FMG_0122	FMG_1112	Phosphate ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	Amino acid ABC transporter permease protein.	0.659
FMG_0123	FMG_0120	Two-component response regulator.	Phosphate ABC transporter permease protein; Part of the binding-protein-dependent transport system for phosphate; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.	0.687
FMG_0123	FMG_0122	Two-component response regulator.	Phosphate ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	0.687
FMG_0123	FMG_0124	Two-component response regulator.	Two-component sensor histidine kinase.	0.996
FMG_0123	FMG_0125	Two-component response regulator.	Conserved membrane spanning protein.	0.503
FMG_0123	FMG_0126	Two-component response regulator.	ABC transporter ATP-binding protein.	0.505
FMG_0124	FMG_0120	Two-component sensor histidine kinase.	Phosphate ABC transporter permease protein; Part of the binding-protein-dependent transport system for phosphate; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.	0.687
FMG_0124	FMG_0122	Two-component sensor histidine kinase.	Phosphate ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	0.688
FMG_0124	FMG_0123	Two-component sensor histidine kinase.	Two-component response regulator.	0.996