FMG_0267 protein (Finegoldia magna ATCC 29328)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

FMG_0267

Hypothetical protein. (184 aa)

Predicted Functional Partners:

FMG_0268

0.773

corA

0.732

FMG_0264

0.721

FMG_0265

0.721

murF

0.481

ddl

0.481

FMG_0269

0.405

FMG_0270

0.403

Your Current Organism:

Finegoldia magna ATCC 29328

NCBI taxonomy Id: 334413
Other names: F. magna ATCC 29328, Finegoldia magna str. ATCC 29328, Finegoldia magna strain ATCC 29328

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FMG_0264	FMG_0265	FMG_0264	FMG_0265	Glycogen phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.	Thioredoxin.	0.773
FMG_0264	FMG_0267	FMG_0264	FMG_0267	Glycogen phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.	Hypothetical protein.	0.721
FMG_0264	FMG_0268	FMG_0264	FMG_0268	Glycogen phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.	Dihydrofolate reductase.	0.736
FMG_0264	corA	FMG_0264	FMG_0266	Glycogen phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.	Magnesium/cobalt transporter; Mediates influx of magnesium ions. Belongs to the CorA metal ion transporter (MIT) (TC 1.A.35) family.	0.762
FMG_0264	ddl	FMG_0264	FMG_0263	Glycogen phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.	D-alanine-D-alanine ligase; Cell wall formation.	0.550
FMG_0264	murF	FMG_0264	FMG_0262	Glycogen phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.	UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily.	0.511
FMG_0265	FMG_0264	FMG_0265	FMG_0264	Thioredoxin.	Glycogen phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.	0.773
FMG_0265	FMG_0267	FMG_0265	FMG_0267	Thioredoxin.	Hypothetical protein.	0.721
FMG_0265	FMG_0268	FMG_0265	FMG_0268	Thioredoxin.	Dihydrofolate reductase.	0.721
FMG_0265	corA	FMG_0265	FMG_0266	Thioredoxin.	Magnesium/cobalt transporter; Mediates influx of magnesium ions. Belongs to the CorA metal ion transporter (MIT) (TC 1.A.35) family.	0.762
FMG_0265	ddl	FMG_0265	FMG_0263	Thioredoxin.	D-alanine-D-alanine ligase; Cell wall formation.	0.511
FMG_0265	murF	FMG_0265	FMG_0262	Thioredoxin.	UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily.	0.511
FMG_0267	FMG_0264	FMG_0267	FMG_0264	Hypothetical protein.	Glycogen phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.	0.721
FMG_0267	FMG_0265	FMG_0267	FMG_0265	Hypothetical protein.	Thioredoxin.	0.721
FMG_0267	FMG_0268	FMG_0267	FMG_0268	Hypothetical protein.	Dihydrofolate reductase.	0.773
FMG_0267	FMG_0269	FMG_0267	FMG_0269	Hypothetical protein.	Hypothetical protein.	0.405
FMG_0267	FMG_0270	FMG_0267	FMG_0270	Hypothetical protein.	Fructose-1-phosphate kinase; Belongs to the carbohydrate kinase PfkB family. LacC subfamily.	0.403
FMG_0267	corA	FMG_0267	FMG_0266	Hypothetical protein.	Magnesium/cobalt transporter; Mediates influx of magnesium ions. Belongs to the CorA metal ion transporter (MIT) (TC 1.A.35) family.	0.732
FMG_0267	ddl	FMG_0267	FMG_0263	Hypothetical protein.	D-alanine-D-alanine ligase; Cell wall formation.	0.481
FMG_0267	murF	FMG_0267	FMG_0262	Hypothetical protein.	UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily.	0.481