Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
FMG_0281Putative sigma factor SigB regulation protein. (368 aa)    
Predicted Functional Partners:
FMG_1043
Conserved hypothetical protein.
 
 
 0.966
FMG_0007
Anti-sigma B factor antagonist; Belongs to the anti-sigma-factor antagonist family.
 
 
 0.952
FMG_0280
Methyltransferase.
 
     0.823
pgi
Glucose-6-phosphate isomerase; Belongs to the GPI family.
       0.810
FMG_0009
RNA polymerase sigma B factor; Belongs to the sigma-70 factor family.
 
 
 0.786
FMG_0283
Conserved hypothetical protein.
       0.768
FMG_0063
Thiamine biosynthesis protein.
   
    0.724
FMG_0284
Conserved hypothetical protein.
       0.722
FMG_1009
Hypothetical protein.
  
 
 0.721
FMG_1535
Hypothetical protein.
  
 
 0.721
Your Current Organism:
Finegoldia magna ATCC 29328
NCBI taxonomy Id: 334413
Other names: F. magna ATCC 29328, Finegoldia magna str. ATCC 29328, Finegoldia magna strain ATCC 29328
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