FMG_0285 protein (Finegoldia magna ATCC 29328)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

FMG_0285

Putative methyltransferase. (233 aa)

Predicted Functional Partners:

FMG_1299

0.964

tmcAL

0.636

FMG_0288

0.591

FMG_0287

0.549

FMG_0286

0.540

queH

0.540

aroK

0.489

FMG_1271

0.440

Your Current Organism:

Finegoldia magna ATCC 29328

NCBI taxonomy Id: 334413
Other names: F. magna ATCC 29328, Finegoldia magna str. ATCC 29328, Finegoldia magna strain ATCC 29328

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FMG_0285	FMG_0286	FMG_0285	FMG_0286	Putative methyltransferase.	Conserved hypothetical protein.	0.540
FMG_0285	FMG_0287	FMG_0285	FMG_0287	Putative methyltransferase.	rRNA methylase.	0.549
FMG_0285	FMG_0288	FMG_0285	FMG_0288	Putative methyltransferase.	Phosphoglycolate phosphatase.	0.591
FMG_0285	FMG_1271	FMG_0285	FMG_1271	Putative methyltransferase.	ABC transporter permease protein.	0.440
FMG_0285	FMG_1299	FMG_0285	FMG_1299	Putative methyltransferase.	Conserved hypothetical protein.	0.964
FMG_0285	aroK	FMG_0285	FMG_1238	Putative methyltransferase.	Shikimate 5-dehydrogenase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate dehydrogenase family.	0.489
FMG_0285	queH	FMG_0285	FMG_0289	Putative methyltransferase.	Conserved hypothetical protein; Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr).	0.540
FMG_0285	tmcAL	FMG_0285	FMG_0685	Putative methyltransferase.	Conserved hypothetical protein; Catalyzes the formation of N(4)-acetylcytidine (ac(4)C) at the wobble position of elongator tRNA(Met), using acetate and ATP as substrates. First activates an acetate ion to form acetyladenylate (Ac- AMP) and then transfers the acetyl group to tRNA to form ac(4)C34.	0.636
FMG_0286	FMG_0285	FMG_0286	FMG_0285	Conserved hypothetical protein.	Putative methyltransferase.	0.540
FMG_0286	FMG_0287	FMG_0286	FMG_0287	Conserved hypothetical protein.	rRNA methylase.	0.799
FMG_0286	FMG_0288	FMG_0286	FMG_0288	Conserved hypothetical protein.	Phosphoglycolate phosphatase.	0.773
FMG_0286	queH	FMG_0286	FMG_0289	Conserved hypothetical protein.	Conserved hypothetical protein; Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr).	0.773
FMG_0287	FMG_0285	FMG_0287	FMG_0285	rRNA methylase.	Putative methyltransferase.	0.549
FMG_0287	FMG_0286	FMG_0287	FMG_0286	rRNA methylase.	Conserved hypothetical protein.	0.799
FMG_0287	FMG_0288	FMG_0287	FMG_0288	rRNA methylase.	Phosphoglycolate phosphatase.	0.774
FMG_0287	queH	FMG_0287	FMG_0289	rRNA methylase.	Conserved hypothetical protein; Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr).	0.773
FMG_0288	FMG_0285	FMG_0288	FMG_0285	Phosphoglycolate phosphatase.	Putative methyltransferase.	0.591
FMG_0288	FMG_0286	FMG_0288	FMG_0286	Phosphoglycolate phosphatase.	Conserved hypothetical protein.	0.773
FMG_0288	FMG_0287	FMG_0288	FMG_0287	Phosphoglycolate phosphatase.	rRNA methylase.	0.774
FMG_0288	queH	FMG_0288	FMG_0289	Phosphoglycolate phosphatase.	Conserved hypothetical protein; Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr).	0.773