Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FMG_0300Conserved hypothetical protein. (301 aa)    
Predicted Functional Partners:
FMG_0299
Conserved hypothetical protein.
 
    0.884
FMG_0385
Pyruvate/ferredoxin oxidoreductase.
  
 
 0.680
FMG_1155
NADP-reducing hydrogenase.
  
 
 0.668
FMG_0304
Iron-sulfur binding reductase.
 
     0.506
FMG_0301
Conserved hypothetical protein.
       0.503
FMG_0305
Conserved hypothetical protein.
  
  
 0.468
FMG_1124
Ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.
  
 
 0.431
FMG_0306
Conserved hypothetical protein.
  
    0.405
Your Current Organism:
Finegoldia magna ATCC 29328
NCBI taxonomy Id: 334413
Other names: F. magna ATCC 29328, Finegoldia magna str. ATCC 29328, Finegoldia magna strain ATCC 29328
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