Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FMG_0301Conserved hypothetical protein. (249 aa)    
Predicted Functional Partners:
FMG_0808
Putative zinc-dependent hydrolase.
  
 0.942
FMG_1161
Lactoylglutathione lyase.
   
 
  0.901
FMG_0302
Conserved hypothetical protein.
 
     0.792
FMG_0304
Iron-sulfur binding reductase.
 
   
 0.772
ybeY
Putative metal-dependent hydrolase; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
   
   0.749
rpsQ
30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.
   
   0.670
FMG_0303
Conserved hypothetical protein.
 
     0.655
FMG_0305
Conserved hypothetical protein.
 
     0.649
FMG_0306
Conserved hypothetical protein.
  
    0.619
FMG_0299
Conserved hypothetical protein.
 
     0.609
Your Current Organism:
Finegoldia magna ATCC 29328
NCBI taxonomy Id: 334413
Other names: F. magna ATCC 29328, Finegoldia magna str. ATCC 29328, Finegoldia magna strain ATCC 29328
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