Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
FMG_0494 | FMG_0495 | FMG_0494 | FMG_0495 | Hypothetical protein. | Conserved hypothetical protein. | 0.671 |
FMG_0494 | FMG_0496 | FMG_0494 | FMG_0496 | Hypothetical protein. | ABC transporter ATP-binding protein. | 0.671 |
FMG_0494 | FMG_0497 | FMG_0494 | FMG_0497 | Hypothetical protein. | Putative malonate transporter. | 0.481 |
FMG_0494 | fusA | FMG_0494 | FMG_0492 | Hypothetical protein. | Translation elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 s [...] | 0.450 |
FMG_0494 | rpsG | FMG_0494 | FMG_0491 | Hypothetical protein. | 30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.403 |
FMG_0494 | tuf-2 | FMG_0494 | FMG_0493 | Hypothetical protein. | Translation elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. | 0.466 |
FMG_0495 | FMG_0494 | FMG_0495 | FMG_0494 | Conserved hypothetical protein. | Hypothetical protein. | 0.671 |
FMG_0495 | FMG_0496 | FMG_0495 | FMG_0496 | Conserved hypothetical protein. | ABC transporter ATP-binding protein. | 0.915 |
FMG_0495 | FMG_0497 | FMG_0495 | FMG_0497 | Conserved hypothetical protein. | Putative malonate transporter. | 0.553 |
FMG_0495 | tuf-2 | FMG_0495 | FMG_0493 | Conserved hypothetical protein. | Translation elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. | 0.419 |
FMG_0496 | FMG_0494 | FMG_0496 | FMG_0494 | ABC transporter ATP-binding protein. | Hypothetical protein. | 0.671 |
FMG_0496 | FMG_0495 | FMG_0496 | FMG_0495 | ABC transporter ATP-binding protein. | Conserved hypothetical protein. | 0.915 |
FMG_0496 | FMG_0497 | FMG_0496 | FMG_0497 | ABC transporter ATP-binding protein. | Putative malonate transporter. | 0.547 |
FMG_0496 | fusA | FMG_0496 | FMG_0492 | ABC transporter ATP-binding protein. | Translation elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 s [...] | 0.407 |
FMG_0496 | tuf-2 | FMG_0496 | FMG_0493 | ABC transporter ATP-binding protein. | Translation elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. | 0.413 |
FMG_0497 | FMG_0494 | FMG_0497 | FMG_0494 | Putative malonate transporter. | Hypothetical protein. | 0.481 |
FMG_0497 | FMG_0495 | FMG_0497 | FMG_0495 | Putative malonate transporter. | Conserved hypothetical protein. | 0.553 |
FMG_0497 | FMG_0496 | FMG_0497 | FMG_0496 | Putative malonate transporter. | ABC transporter ATP-binding protein. | 0.547 |
fusA | FMG_0494 | FMG_0492 | FMG_0494 | Translation elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 s [...] | Hypothetical protein. | 0.450 |
fusA | FMG_0496 | FMG_0492 | FMG_0496 | Translation elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 s [...] | ABC transporter ATP-binding protein. | 0.407 |
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