Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
FMG_0585Lipopolysaccharide biosynthesis protein. (339 aa)    
Predicted Functional Partners:
FMG_0584
UDP-glucose/GDP-mannose dehydrogenase; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
 
 
 0.992
FMG_0583
Putative acetyltransferase.
  
 0.952
FMG_0582
Pleiotropic regulatory protein; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.902
lysS
lysyl-tRNA synthetase class II; Belongs to the class-II aminoacyl-tRNA synthetase family.
  
    0.760
FMG_0580
Conserved hypothetical protein; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.736
FMG_0581
Putative glycosyltransferase.
       0.669
FMG_0503
Putative glycosyltransferase.
 
  
 0.649
FMG_0385
Pyruvate/ferredoxin oxidoreductase.
     
 0.476
FMG_0579
Transcriptional regulator Fur family; Belongs to the Fur family.
       0.423
rbsK
Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
 
  
 0.404
Your Current Organism:
Finegoldia magna ATCC 29328
NCBI taxonomy Id: 334413
Other names: F. magna ATCC 29328, Finegoldia magna str. ATCC 29328, Finegoldia magna strain ATCC 29328
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