Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
FMG_0609Sortase family protein. (223 aa)    
Predicted Functional Partners:
FMG_0152
Na+driven multidrug efflux pump.
   
  
 0.619
FMG_0207
Na+driven multidrug efflux pump.
   
  
 0.619
FMG_0935
Na+driven multidrug efflux pump.
   
  
 0.619
FMG_1413
Na+driven multidrug efflux pump.
   
  
 0.619
FMG_1457
Na+driven multidrug efflux pump.
   
  
 0.619
mraZ
Conserved hypothetical protein; Belongs to the MraZ family.
       0.514
rsmH
S-adenosyl-methyltransferase; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA.
       0.514
murG
Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily.
 
   
 0.490
FMG_0612
Conserved hypothetical protein.
       0.443
FMG_0613
Cell division protein; Penicillin-binding protein 2 homolog.
       0.443
Your Current Organism:
Finegoldia magna ATCC 29328
NCBI taxonomy Id: 334413
Other names: F. magna ATCC 29328, Finegoldia magna str. ATCC 29328, Finegoldia magna strain ATCC 29328
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