Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
FMG_0689Conserved hypothetical protein. (376 aa)    
Predicted Functional Partners:
FMG_0847
Putative oxygen-independent coproporphyrinogen III oxidase.
 
     0.768
hisS
histidyl-tRNA synthetase.
       0.753
FMG_0888
Putative 8-oxoguanine DNA glycosylase.
  
     0.687
FMG_0092
Putative DNA replication protein.
  
     0.605
FMG_0091
Acetyltransferase.
  
     0.521
thrS
threonyl-tRNA synthetase; Catalyzes the attachment of threonine to tRNA(Thr) in a two- step reaction: L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr). Also edits incorrectly charged L-seryl-tRNA(Thr).
       0.510
FMG_0749
Integrase; Recombinase; Belongs to the 'phage' integrase family.
  
     0.505
FMG_0687
Conserved hypothetical protein.
 
     0.461
FMG_1043
Conserved hypothetical protein.
  
     0.458
FMG_0088
Exopolyphosphatase related protein; Has phosphodiesterase (PDE) activity against cyclic-di-AMP (c-di-AMP); Belongs to the GdpP/PdeA phosphodiesterase family.
  
     0.436
Your Current Organism:
Finegoldia magna ATCC 29328
NCBI taxonomy Id: 334413
Other names: F. magna ATCC 29328, Finegoldia magna str. ATCC 29328, Finegoldia magna strain ATCC 29328
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