Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
FMG_0713DNA-binding response regulator. (232 aa)    
Predicted Functional Partners:
FMG_0124
Two-component sensor histidine kinase.
 
   0.811
FMG_1155
NADP-reducing hydrogenase.
   
 
 0.807
selD
Selenophosphate synthetase; Synthesizes selenophosphate from selenide and ATP.
       0.783
FMG_0820
Two-component sensor histidine kinase.
 
 
 0.782
FMG_0711
Late competence protein; DNA binding and uptake.
       0.742
FMG_0590
Two-component sensor histidine kinase.
 
 
 0.722
FMG_0131
Two-component sensor histidine kinase.
 
 
 0.686
FMG_0898
Two-component sensor histidine kinase.
 
   0.686
FMG_0606
Two-component sensor histidine kinase.
 
 
 0.665
FMG_1063
Putative two-component sensor histidine kinase.
 
 
 0.658
Your Current Organism:
Finegoldia magna ATCC 29328
NCBI taxonomy Id: 334413
Other names: F. magna ATCC 29328, Finegoldia magna str. ATCC 29328, Finegoldia magna strain ATCC 29328
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