Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
rexAT-rich DNA-binding protein; Modulates transcription in response to changes in cellular NADH/NAD(+) redox state. (215 aa)    
Predicted Functional Partners:
rnpA
Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.
   
    0.799
rpsP
30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.
   
    0.628
FMG_1232
Transcriptional regulator CarD family.
   
    0.577
FMG_0877
Conserved hypothetical protein.
       0.527
FMG_1429
Molybdenum cofactor biosynthesis protein C.
  
  
 0.518
FMG_0879
Carbon starvation protein.
       0.503
FMG_0385
Pyruvate/ferredoxin oxidoreductase.
     
 0.487
argR
Transcriptional regulator ArgR family; Regulates arginine biosynthesis genes.
  
  
 0.464
FMG_0386
Putative acyl-CoA dehydrogenase.
     
 0.457
FMG_0071
3-hydroxyacyl-CoA dehydrogenase.
     
 0.456
Your Current Organism:
Finegoldia magna ATCC 29328
NCBI taxonomy Id: 334413
Other names: F. magna ATCC 29328, Finegoldia magna str. ATCC 29328, Finegoldia magna strain ATCC 29328
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