FMG_0950 protein (Finegoldia magna ATCC 29328)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

FMG_0950

Conserved hypothetical protein. (542 aa)

Predicted Functional Partners:

FMG_0949

0.955

FMG_0951

0.734

FMG_0104

0.687

FMG_0331

0.658

FMG_0079

0.598

FMG_0953

0.598

FMG_1372

0.598

FMG_1534

0.598

FMG_0078

0.569

FMG_1373

0.569

Your Current Organism:

Finegoldia magna ATCC 29328

NCBI taxonomy Id: 334413
Other names: F. magna ATCC 29328, Finegoldia magna str. ATCC 29328, Finegoldia magna strain ATCC 29328

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
FMG_0078	FMG_0079	Type I restriction-modification enzyme specificity subunit.	Type I restriction-modification enzyme restriction subunit; Subunit R is required for both nuclease and ATPase activities, but not for modification.	0.976
FMG_0078	FMG_0104	Type I restriction-modification enzyme specificity subunit.	Conserved hypothetical protein.	0.553
FMG_0078	FMG_0331	Type I restriction-modification enzyme specificity subunit.	Conserved hypothetical protein.	0.592
FMG_0078	FMG_0950	Type I restriction-modification enzyme specificity subunit.	Conserved hypothetical protein.	0.569
FMG_0078	FMG_0953	Type I restriction-modification enzyme specificity subunit.	Putative DNA methyltransfarase.	0.623
FMG_0078	FMG_1372	Type I restriction-modification enzyme specificity subunit.	Type I restriction-modification system restriction subunit; Subunit R is required for both nuclease and ATPase activities, but not for modification.	0.592
FMG_0078	FMG_1534	Type I restriction-modification enzyme specificity subunit.	Type I restriction enzyme; Subunit R is required for both nuclease and ATPase activities, but not for modification.	0.744
FMG_0079	FMG_0078	Type I restriction-modification enzyme restriction subunit; Subunit R is required for both nuclease and ATPase activities, but not for modification.	Type I restriction-modification enzyme specificity subunit.	0.976
FMG_0079	FMG_0104	Type I restriction-modification enzyme restriction subunit; Subunit R is required for both nuclease and ATPase activities, but not for modification.	Conserved hypothetical protein.	0.561
FMG_0079	FMG_0331	Type I restriction-modification enzyme restriction subunit; Subunit R is required for both nuclease and ATPase activities, but not for modification.	Conserved hypothetical protein.	0.600
FMG_0079	FMG_0950	Type I restriction-modification enzyme restriction subunit; Subunit R is required for both nuclease and ATPase activities, but not for modification.	Conserved hypothetical protein.	0.598
FMG_0079	FMG_0953	Type I restriction-modification enzyme restriction subunit; Subunit R is required for both nuclease and ATPase activities, but not for modification.	Putative DNA methyltransfarase.	0.708
FMG_0079	FMG_1373	Type I restriction-modification enzyme restriction subunit; Subunit R is required for both nuclease and ATPase activities, but not for modification.	Type I restriction-modification system specificity subunit.	0.547
FMG_0104	FMG_0078	Conserved hypothetical protein.	Type I restriction-modification enzyme specificity subunit.	0.553
FMG_0104	FMG_0079	Conserved hypothetical protein.	Type I restriction-modification enzyme restriction subunit; Subunit R is required for both nuclease and ATPase activities, but not for modification.	0.561
FMG_0104	FMG_0331	Conserved hypothetical protein.	Conserved hypothetical protein.	0.561
FMG_0104	FMG_0950	Conserved hypothetical protein.	Conserved hypothetical protein.	0.687
FMG_0104	FMG_1372	Conserved hypothetical protein.	Type I restriction-modification system restriction subunit; Subunit R is required for both nuclease and ATPase activities, but not for modification.	0.561
FMG_0104	FMG_1373	Conserved hypothetical protein.	Type I restriction-modification system specificity subunit.	0.553
FMG_0104	FMG_1534	Conserved hypothetical protein.	Type I restriction enzyme; Subunit R is required for both nuclease and ATPase activities, but not for modification.	0.613