Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
FMG_0986Putative replication initiator. (257 aa)    
Predicted Functional Partners:
FMG_0984
Conserved hypothetical protein.
 
     0.950
FMG_0985
DNA replication protein; Phage-related.
 
     0.950
FMG_0982
Putative plasmid transfer factor.
 
     0.906
FMG_0983
Putative phage-associated antirepressor.
 
     0.880
FMG_0957
Putative bacteriocin.
  
     0.773
FMG_0959
Putative peptidase.
  
     0.769
FMG_0958
Putative chimeric erythrocyte-binding protein.
  
    0.760
FMG_0953
Putative DNA methyltransfarase.
  
     0.736
rpoA
DNA-directed RNA polymerase alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.734
FMG_0963
Conserved hypothetical protein.
 
     0.720
Your Current Organism:
Finegoldia magna ATCC 29328
NCBI taxonomy Id: 334413
Other names: F. magna ATCC 29328, Finegoldia magna str. ATCC 29328, Finegoldia magna strain ATCC 29328
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