FMG_1028 protein (Finegoldia magna ATCC 29328)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

FMG_1028

Putative penicillin-binding protein. (472 aa)

Predicted Functional Partners:

FMG_1029

0.997

FMG_0717

0.983

FMG_0897

0.963

FMG_1030

0.953

FMG_0361

0.946

FMG_0103

0.935

FMG_0613

0.930

FMG_0616

0.926

FMG_0100

0.924

FMG_1490

0.913

Your Current Organism:

Finegoldia magna ATCC 29328

NCBI taxonomy Id: 334413
Other names: F. magna ATCC 29328, Finegoldia magna str. ATCC 29328, Finegoldia magna strain ATCC 29328

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
FMG_0100	FMG_0103	D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.	D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.	0.948
FMG_0100	FMG_0361	D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.	Putative penicillin-binding protein 2.	0.914
FMG_0100	FMG_0613	D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.	Cell division protein; Penicillin-binding protein 2 homolog.	0.941
FMG_0100	FMG_0897	D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.	Putative penicillin-binding protein 1A.	0.907
FMG_0100	FMG_1028	D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.	Putative penicillin-binding protein.	0.924
FMG_0100	FMG_1490	D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.	D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.	0.923
FMG_0103	FMG_0100	D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.	D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.	0.948
FMG_0103	FMG_0361	D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.	Putative penicillin-binding protein 2.	0.952
FMG_0103	FMG_0613	D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.	Cell division protein; Penicillin-binding protein 2 homolog.	0.944
FMG_0103	FMG_0897	D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.	Putative penicillin-binding protein 1A.	0.907
FMG_0103	FMG_1028	D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.	Putative penicillin-binding protein.	0.935
FMG_0103	FMG_1490	D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.	D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.	0.928
FMG_0361	FMG_0100	Putative penicillin-binding protein 2.	D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.	0.914
FMG_0361	FMG_0103	Putative penicillin-binding protein 2.	D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.	0.952
FMG_0361	FMG_0613	Putative penicillin-binding protein 2.	Cell division protein; Penicillin-binding protein 2 homolog.	0.911
FMG_0361	FMG_0616	Putative penicillin-binding protein 2.	Cell division protein homolog; Belongs to the SEDS family.	0.735
FMG_0361	FMG_0717	Putative penicillin-binding protein 2.	Cell division protein RodA homolog; Belongs to the SEDS family.	0.902
FMG_0361	FMG_0897	Putative penicillin-binding protein 2.	Putative penicillin-binding protein 1A.	0.971
FMG_0361	FMG_1028	Putative penicillin-binding protein 2.	Putative penicillin-binding protein.	0.946
FMG_0361	FMG_1029	Putative penicillin-binding protein 2.	Cell division membrane protein; Belongs to the SEDS family.	0.703