Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FMG_1054ABC transporter ATP-binding protein. (227 aa)    
Predicted Functional Partners:
FMG_1053
ABC transporter permease protein.
 
 0.998
FMG_1055
ABC transporter ATP-binding protein.
 
 
 0.940
FMG_1560
Oligopeptide ABC transporter permease protein.
 
      0.860
FMG_1249
Oligopeptide ABC transporter permease protein.
 
      0.765
FMG_1056
Aminoacyl-histidine dipeptidase.
       0.625
FMG_1057
Conserved hypothetical protein.
       0.625
FMG_1058
Putative phosphatase.
  
    0.622
FMG_0489
ABC transporter ATP-binding protein.
  
     0.618
FMG_1061
ABC transporter permease protein.
  
   0.588
FMG_1554
Ribose/galactoside ABC transporter ATP-binding protein.
  
     0.549
Your Current Organism:
Finegoldia magna ATCC 29328
NCBI taxonomy Id: 334413
Other names: F. magna ATCC 29328, Finegoldia magna str. ATCC 29328, Finegoldia magna strain ATCC 29328
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